Bioinformatics
1st Semester, 2007-2008
John Paul Vergara, PhD

Course Material

• Computational Questions
• Where CS and the Life Sciences meet
• Algorithms and PseudoCode
• Active Perl Installer or Zip file ; command prompt tool
• Perl slides (incomplete, but will be updated),
• Sample Perl Scripts and Exercises
• Summary of special characters for pattern matching in Perl.
• Perl Scripts used in class: ZIP , RAR .
• Sequence Alignment slides, Perl script for sequence alignment
• Phylogeny slides, an example of an approximation algorithm by Gaston Ginnet.